| Program | 1999-00 | 2000-01 | 2001-02 | 2002-03 | 2003-04 | 2004-05 | 2005-06 | |||||||
| Name | Masters | Doctoral | Masters | Doctoral | Masters | Doctoral | Masters | Doctoral | Masters | Doctoral | Masters | Doctoral | Masters | Doctoral |
| Agr. & Resource Economics | 10 | 13 | 8 | 11 | 13 | 6 | 26 | 4 | 20 | 10 | 4 | 5 | 24 | 12 |
| Agric & Environ. Chem | 2 | 9 | 3 | 4 | 3 | 11 | 5 | 8 | 1 | 6 | 3 | 4 | 3 | 5 |
| Agronomy (3) | 0 | 0 | 0 | 0 | ||||||||||
| Animal Behavior | 2 | 3 | 6 | 2 | 8 | 3 | 2 | 8 | 2 | 4 | 3 | 3 | 4 | 5 |
| Animal Biology (8) | 12 | 0 | 10 | 0 | 9 | 0 | 19 | 0 | 15 | 0 | 2 | 0 | 9 | 0 |
| Animal Science (8) | 2 | 0 | 4 | 0 | ||||||||||
| Anthropology | 5 | 5 | 6 | 8 | 9 | 6 | 5 | 5 | 10 | 8 | 2 | 2 | 11 | 8 |
| Applied Mathematics | 3 | 3 | 3 | 3 | 1 | 6 | 2 | 2 | 3 | 3 | 3 | 1 | 2 | 5 |
| Applied Science Engineering | 10 | 15 | 7 | 5 | 9 | 9 | 10 | 9 | 10 | 6 | 5 | 3 | 12 | 10 |
| Art | 7 | 0 | 7 | 0 | 7 | 0 | 9 | 0 | 7 | 0 | 2 | 0 | 6 | 0 |
| Art History (formerly History of Art) (4) | 2 | 0 | 6 | 0 | 2 | 0 | 9 | 0 | 6 | 0 | 4 | 0 | 4 | 0 |
| Atmospheric Science | 1 | 1 | 4 | 0 | 2 | 1 | 2 | 3 | 1 | 0 | 1 | 0 | 3 | 2 |
| Avian Science | 6 | 0 | 3 | 0 | 3 | 0 | 1 | 0 | 3 | 0 | 2 | 0 | 4 | 0 |
| Biochemistry & Molecular Biology | 3 | 4 | 3 | 6 | 2 | 12 | 1 | 13 | 2 | 7 | 3 | 6 | 3 | 7 |
| Biological & Agricultural Engineering (5) | 9 | 5 | 4 | 6 | 6 | 3 | 6 | 10 | ||||||
| Biological Systems Engineering (5) | 0 | 0 | 0 | 0 | 8 | 3 | 2 | 0 | 5 | 1 | 3 | 6 | 10 | 6 |
| Biomedical Engineering | 13 | 4 | 9 | 2 | 12 | 0 | 9 | 6 | 7 | 4 | 9 | 2 | 13 | 6 |
| Biophysics | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 2 | 1 | 3 | ||||
| Biostatistics | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 4 | 1 | ||||
| Cell & Developmental Biology | 0 | 4 | 0 | 6 | 2 | 1 | 0 | 5 | 1 | 3 | 0 | 5 | 1 | 3 |
| Chemical Engineering (1) | 15 | 5 | 3 | 11 | 7 | 8 | 5 | 8 | 9 | 6 | 8 | 2 | 3 | 5 |
| Chemical Engineering & Materls Sci (1) | 0 | 0 | 0 | 0 | ||||||||||
| Chemistry | 7 | 18 | 7 | 16 | 7 | 31 | 4 | 18 | 4 | 18 | 10 | 14 | 7 | 34 |
| Child Development | 6 | 0 | 6 | 0 | 6 | 0 | 4 | 0 | 7 | 0 | 2 | 0 | 6 | 0 |
| Civil & Environmental Engineering | 48 | 18 | 34 | 14 | 30 | 9 | 30 | 16 | 25 | 11 | 48 | 6 | 38 | 16 |
| Community Development | 11 | 0 | 12 | 0 | 10 | 0 | 10 | 0 | 12 | 0 | 15 | 0 | 15 | 0 |
| Comparative Literature | 0 | 7 | 0 | 6 | 0 | 3 | 0 | 2 | 0 | 1 | 1 | 2 | ||
| Comparative Pathology | 5 | 6 | 4 | 9 | 6 | 12 | 4 | 12 | 8 | 13 | 5 | 12 | 4 | 12 |
| Computer Science | 16 | 9 | 33 | 8 | 28 | 4 | 19 | 8 | 48 | 9 | 19 | 9 | 25 | 12 |
| Cultural Studies | 8 | 2 | 0 | 0 | 8 | 0 | 1 | 0 | 5 | 2 | 0 | 1 | 0 | 3 |
| Dramatic Art | 0 | 0 | 5 | 3 | 10 | 0 | 10 | 2 | 10 | 0 | 12 | 0 | 9 | 0 |
| Ecology | 11 | 19 | 13 | 17 | 13 | 22 | 18 | 27 | 13 | 27 | 3 | 25 | 17 | 21 |
| Economics | 7 | 8 | 20 | 6 | 14 | 5 | 19 | 7 | 16 | 8 | 2 | 7 | 11 | 13 |
| Education (PhD/MA) | 5 | 7 | 3 | 10 | 1 | 6 | 1 | 8 | 3 | 4 | 7 | 9 | 3 | 6 |
| Education MA/Credential | 0 | 0 | 0 | 0 | 63 | 0 | 112 | 0 | 99 | 0 | ||||
| Electrical & Computer Engineering | 32 | 12 | 22 | 11 | 33 | 12 | 33 | 7 | 42 | 14 | 21 | 9 | 30 | 14 |
| Endocrinology | 0 | 1 | 0 | 1 | 0 | 1 | ||||||||
| Engineering | 0 | 1 | 0 | 1 | ||||||||||
| English | 18 | 7 | 15 | 6 | 15 | 9 | 16 | 8 | 15 | 12 | 21 | 5 | 18 | 8 |
| Entomology | 3 | 7 | 2 | 0 | 2 | 3 | 3 | 5 | 3 | 2 | 1 | 0 | 6 | 4 |
| Epidemiology | 0 | 1 | 1 | 9 | 3 | 5 | 4 | 8 | 3 | 10 | 2 | 2 | 7 | 10 |
| Exercise Science | 3 | 0 | 1 | 0 | 1 | 0 | 3 | 0 | 6 | 0 | 5 | 0 | 2 | 0 |
| Food Science | 16 | 8 | 15 | 7 | 22 | 6 | 14 | 4 | 14 | 6 | 5 | 2 | 9 | 7 |
| Forensic Science | 4 | 0 | 10 | 0 | ||||||||||
| French | 0 | 2 | 1 | 2 | 0 | 6 | 0 | 3 | 0 | 1 | 1 | 1 | 1 | 2 |
| Genetics | 4 | 8 | 4 | 10 | 6 | 8 | 1 | 12 | 5 | 9 | 3 | 5 | 6 | 6 |
| Geography | 1 | 1 | 3 | 2 | 5 | 2 | 5 | 5 | 5 | 6 | 5 | 5 | 5 | 3 |
| Geology | 5 | 4 | 7 | 1 | 3 | 4 | 5 | 0 | 9 | 1 | 3 | 1 | 4 | 4 |
| German | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 2 | 0 | 2 | 0 | ||
| History | 4 | 11 | 3 | 9 | 4 | 2 | 1 | 8 | 7 | 6 | 9 | 6 | 10 | 6 |
| History of Art (4) | 0 | 0 | 0 | 0 | ||||||||||
| Horticulture (3) | 0 | 0 | 0 | 0 | ||||||||||
| Horticulture & Agronomy (3) | 20 | 0 | 25 | 0 | 18 | 0 | 11 | 0 | 27 | 0 | 12 | 0 | 17 | 0 |
| Human Development | 0 | 0 | 0 | 8 | 0 | 7 | 0 | 2 | 0 | 3 | 0 | 1 | 0 | 3 |
| Hydrologic Sciences | 2 | 3 | 6 | 2 | 7 | 5 | 4 | 0 | 5 | 5 | 3 | 8 | 6 | 2 |
| Immunology | 1 | 1 | 2 | 3 | 0 | 2 | 5 | 2 | 4 | 5 | 6 | 1 | 6 | 5 |
| Individual Program | 0 | 0 | 0 | 2 | 0 | 2 | 0 | 2 | 0 | 1 | 0 | 3 | ||
| Integrated Pest Management (7) | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 0 | 3 | 0 | 4 | 0 | ||
| International Agricultural Development | 13 | 0 | 12 | 0 | 5 | 0 | 14 | 0 | 16 | 0 | 10 | 0 | 12 | 0 |
| International Commercial Law | 13 | 0 | 3 | 0 | 8 | 0 | 6 | 0 | 3 | 0 | 9 | 0 | ||
| Joint Ecology/San Diego State Univ. | 0 | 1 | 0 | 1 | 0 | 2 | 0 | 2 | 0 | 1 | ||||
| Joint Prg. Ed. Leadership - CSUF | 0 | 8 | 0 | 9 | 0 | 10 | 0 | 13 | 0 | 5 | 0 | 8 | 0 | 7 |
| Linguistics | 7 | 0 | 3 | 0 | 12 | 0 | 5 | 0 | 8 | 0 | 3 | 0 | 8 | 0 |
| M.Ed. Education (2) | 1 | 0 | 0 | 0 | ||||||||||
| Materials Science & Engineering (1) | 4 | 1 | 0 | 4 | 1 | 3 | 4 | 4 | 4 | 3 | 2 | 6 | 2 | 11 |
| Mathematics | 10 | 3 | 13 | 6 | 4 | 2 | 8 | 5 | 7 | 5 | 6 | 2 | 11 | 6 |
| Mechanical & Aeronautical Engineering | 19 | 10 | 25 | 8 | 38 | 4 | 26 | 0 | 37 | 7 | 42 | 8 | 44 | 5 |
| Medical Informatics | 6 | 0 | 13 | 0 | 12 | 0 | 7 | 0 | 4 | 0 | 7 | 0 | ||
| Microbiology | 2 | 9 | 1 | 5 | 0 | 11 | 3 | 6 | 1 | 5 | 1 | 7 | 1 | 8 |
| Molecular, Cellular & Integrative Physiology (6) | 0 | 0 | 0 | 0 | 3 | 7 | 4 | 11 | 2 | 3 | 3 | 8 | 1 | 7 |
| Music | 0 | 2 | 1 | 1 | 1 | 3 | 0 | 2 | 3 | 1 | 3 | 1 | 1 | 1 |
| Native American Studies | 0 | 0 | 3 | 0 | 4 | 0 | 4 | 1 | 4 | 1 | 0 | 1 | 2 | 2 |
| Neuroscience | 0 | 4 | 0 | 4 | 0 | 3 | 0 | 3 | 0 | 5 | 0 | 5 | 1 | 6 |
| Nutrition (9) | 12 | 19 | 12 | 11 | 9 | 8 | 3 | 8 | 6 | 14 | 4 | 7 | ||
| Nutritional Biology (9) | 0 | 2 | 4 | 22 | ||||||||||
| Performance Studies | 0 | 1 | ||||||||||||
| Pharmacology & Toxicology | 1 | 6 | 6 | 7 | 3 | 3 | 1 | 4 | 2 | 13 | 0 | 6 | 7 | 11 |
| Philosophy | 3 | 2 | 0 | 3 | 2 | 1 | 3 | 3 | 2 | 1 | 1 | 1 | 8 | 0 |
| Physical Education (2) | 10 | 11 | 0 | 0 | 11 | 12 | ||||||||
| Physics | 0 | 0 | 10 | 11 | 2 | 8 | 17 | 11 | 10 | 6 | 17 | 9 | ||
| Physiology (6) | 2 | 7 | 2 | 4 | ||||||||||
| Plant Biology | 5 | 6 | 1 | 9 | 3 | 14 | 7 | 12 | 2 | 12 | 2 | 9 | 3 | 11 |
| Plant Pathology | 6 | 8 | 0 | 9 | 1 | 1 | 0 | 3 | 4 | 6 | 3 | 4 | 3 | 2 |
| Plant Protection & Pest Management (7) | 4 | 0 | 7 | 0 | 5 | 0 | 1 | 0 | ||||||
| Political Science | 4 | 3 | 4 | 4 | 3 | 3 | 6 | 5 | 5 | 3 | 3 | 3 | 6 | 5 |
| Population Biology | 1 | 5 | 2 | 1 | 4 | 6 | 1 | 9 | 2 | 11 | 1 | 3 | 2 | 3 |
| Psychology | 6 | 4 | 12 | 5 | 10 | 4 | 5 | 3 | 11 | 15 | 8 | 3 | 6 | 12 |
| Rhetoric & Communication (2) | 0 | 0 | ||||||||||||